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Pancreatic Cancer MRNA Vaccine Shows Lasting Results In Early Trial

NBC News reports on a 16-person clinical trial of "personalized messenger RNA vaccines" which use the immune system to fight cancer cells. "The goal is not to eliminate existing tumors, but instead to stamp out lingering, undetected cancer cells, and later any new cells that form before they can cause a recurrence." Patients still have surgery to remove tumors. After that, the mRNA vaccines are personalized for each individual using genetic material taken from their unique tumor cells. In the clinical trial, after getting the vaccine, the patients also received chemotherapy, which is standard post-op treatment for operable pancreatic cancer... [The article notes that less than 13% of people diagnosed with pancreatic cancer live for more than five years, making it "one of the deadliest cancers."] [E]xperts have long believed that people with pancreatic cancer could not generate an immune response against tumors. But after nine doses of the personalized vaccine, [clinical trial participant Donna] Gustafson is one of eight people in the 16-person Phase 1 trial who did just that, producing an army of immune cells called T cells that seek out and destroy tumor cells... [Dr. Vinod Balachandran, a vaccine center director who is leading the trial, said] it was unclear whether the immune response would last and lead to the patients living longer... New data collected during the trial's six-year follow-up period shows that it may. Those findings will be presented Monday at the American Association for Cancer Research's annual meeting in San Diego. Six years after treatment, Gustafson and six others who responded to the treatment are still alive... More research is still needed. Genentech and BioNTech, the two drugmakers behind the vaccine, have already launched a larger Phase 2 clinical trial... Another team is working on an off-the-shelf vaccine that targets a protein called KRAS that is present in as many as 90% of pancreatic cancers. In a small, early trial, about 85% of the participants mounted an immune response to the protein.

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OpenAI Starts Offering a Biology-Tuned LLM

An anonymous reader quotes a report from Ars Technica: On Thursday, OpenAI announced it had developed a large language model specifically trained on common biology workflows. Called GPT-Rosalind after Rosalind Franklin, the model appears to differ from most science-focused models from major tech companies, which have generally taken a more generic approach that works for various fields. In a press briefing, Yunyun Wang, OpenAI's Life Sciences Product Lead, said the system was designed to tackle two major roadblocks faced by current biology researchers. One is the massive datasets created by decades of genome sequencing and protein biochemistry, which can be too much for any one researcher to take in. The second is that biology has many highly specialized subfields, each with its own techniques and jargon. So, for example, a geneticist who finds themselves working on a gene that's active in brain cells might struggle to understand the immense neurobiological literature. Wang said the company had taken an LLM and trained it on 50 of the most common biological workflows, as well as on how to access the major public databases of biological information. Further training has resulted in a system that can suggest likely biological pathways and prioritize potential drug targets. "We're connecting genotype to phenotype through known pathways and regulatory mechanisms, infer likely structural or functional properties of proteins, and really leveraging this mechanistic understanding," Wang said. To address LLMs' tendencies toward sycophancy and overenthusiasm, OpenAI says it has tuned the model to be more skeptical, so it's more likely to tell you when something is a bad drug target. There was a lot of talk about GPT-Rosalind's "reasoning" and "expert-level" abilities. We were told that the former was defined as being able to work through complex, multi-step processes, while the latter was derived from the model's performance on a handful of benchmarks. Access to GPT-Rosalind is currently limited "due to concerns about the model's potential for harmful outputs if asked to do something like optimize a virus's infectivity," notes Ars. Only U.S.-based organizations can request access at the moment.

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DNA-Level Encryption Developed by Researchers to Protect the Secrets of Bioengineered Cells

The biotech industry's engineered cells could become an $8 trillion market by 2035, notes Phys.org. But how do you keep them from being stolen? Their article notes "an uptick in the theft and smuggling of high-value biological materials, including specially engineered cells." In Science Advances, a team of U.S. researchers present a new approach to genetically securing precious biological material. They created a genetic combination lock in which the locking or encryption process scrambled the DNA of a cell so that its important instructions were non-functional and couldn't be easily read or used. The unlocking, or decryption, process involves adding a series of chemicals in a precise order over time — like entering a password — to activate recombinases, which then unscramble the DNA to their original, functional form... They created a biological keypad with nine distinct chemicals, each acting as a one-digit input. By using the same chemicals in pairs to form two-digit inputs, where two chemicals must be present simultaneously to activate a sensor, they expanded the keypad to 45 possible chemical inputs without introducing any new chemicals. They also added safety penalties — if someone tampers with the system, toxins are released — making it extremely unlikely for an unauthorized person to access the cells. "The researchers conducted an ethical hacking exercise on the test lock and found that random guessing yielded a 0.2% success rate, remarkably close to the theoretical target of 0.1%."

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Startup Pitches 'Brainless Clones' To Serve the Role of Backup Human Bodies

MIT Technology Review discovered that startup R3 Bio has pitched an ethically and scientifically explosive long-term vision beyond its public work on non-sentient monkey "organ sacks": creating human "brainless clones" or replacement bodies for organs as part of an extreme life-extension agenda. From the report: Imagine it like this: a baby version of yourself with only enough of a brain structure to be alive in case you ever need a new kidney or liver. Or, alternatively, he has speculated, you might one day get your brain placed into a younger clone. That could be a way to gain a second lifespan through a still hypothetical procedure known as a body transplant. The fuller context of R3's proposals, as well as activities of another stealth startup with related goals, have not previously been reported. They've been kept secret by a circle of extreme life-extension proponents who fear that their plans for immortality could be derailed by clickbait headlines and public backlash. And that's because the idea can sound like something straight from a creepy science fiction film. One person who heard R3's clone presentation, and spoke on the condition of anonymity, was left reeling by its implications and shaken by [R3 founder John Schloendorn's] enthusiastic delivery. The briefing, this person said, was like a "close encounter of the third kind" with "Dr. Strangelove." [...] MIT Technology Review found no evidence that R3 has cloned anyone, or even any animal bigger than a rodent. What we did find were documents, additional meeting agendas, and other sources outlining a technical road map for what R3 called "body replacement cloning" in a 2023 letter to supporters. That road map involved improvements to the cloning process and genetic wiring diagrams for how to create animals without complete brains. A main purpose of the fundraising, investors say, was to support efforts to try these techniques in monkeys from a base in the Caribbean. That offered a path to a nearer-term business plan for more ethical medical experiments and toxicology testing -- if the company could develop what it now calls monkey "organ sacks." However, this work would clearly inform any possible human version.

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Juicier Steaks Soon? The UK Approves Testing of Gene-Edited Cow Feed

"Juicier steaks could soon be served up after barley was given the go-ahead to become Britain's first gene-edited crop," reports the Telegraph: In an effort to fatten up cows and get them to market faster, scientists have altered the DNA of Golden Promise barley to increase its fat content... [Regulators have approved the feeding of that barley to cows for further studies.] [T]he small increase reduces the time it takes for farmers to raise animals for slaughter and increases the amount of milk and meat they produce to make the industry more profitable. The gene-edited barley is also able to cut the amount of methane a cow produces, [Rothamsted Research professor/biochemist Peter] Eastmond said... Reducing methane from cattle is a major goal of the industry, and Professor Eastmond estimated his barley could cut the methane output from a single cow by up to 15%. The two genetic tweaks to the barley are believed to alter the gut bacteria in cows' stomachs and reduce the amount of methane-generating microbes, cutting the cows' emissions.... [Eastmond] is also working on applying the same two gene edits to rye grass to create pastures and meadows which are lipid-rich and calorie-dense. This, he said, could lead to entire fields of gene-edited grass which could be grazed by cows, sheep, horses and goats to fatten them up and cut emissions... "It would be better to have this technology in a pasture grass that's grown to supply the livestock and graze it directly." The barley "has been modified to have a single letter of DNA removed from two different genes to switch them off," the article points out. "No genes have been added to its DNA and it is not considered to be genetically modified." The article points out that Britain "has launched a push towards more gene-edited crops as a key post-Brexit freedom since splitting from the European Union," noting that U.K. scientists and private companies "have created products such as bread with fewer cancer-causing chemicals, longer-lasting strawberries and bananas, sweeter-tasting lettuce and disease-resistant potatoes, although these are yet to be granted permission to land on supermarket shelves..." But the EU has so far resisted the sale of any gene-edited crops in the EU. Thanks to long-time Slashdot reader fjo3 for sharing the article.

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U.S. State Bans on Lab-Grown Meats Challenged in Court

Last June Texas Agriculture Commissioner Sid Miller said in a statement that Texans "have a God-given right to know what's on their plate, and for millions of Texans, it better come from a pasture, not a lab. It's plain cowboy logic that we must safeguard our real, authentic meat industry from synthetic alternatives." But California company Wildtype sells lab-grown salmon — and is suing Texas over its ban on cell-cultivated meat, the Austin Chronicle reported this week. The company's founder says lab-grown salmon eliminates the mercury, microplastic, and antibiotic contamination commonly found in seafood. And one chef in Austin, Texas says lab-grown salmon is "awesome" and "something new"-- at the only Texas restaurant that was serving it last summer: Just two months after the salmon hit the menu, Texas banned the sale of cell-cultivated meat... A lawsuit from Wildtype and one other FDA-approved cultivated meat company [argues] it's anti-capitalism and unconstitutional... This law "was not enacted to protect the health and safety of Texas consumers — indeed, it allows the continued distribution of cultivated meat to consumers so long as it is not sold. Instead, SB 261 was enacted to stifle the growth of the cultivated meat industry to protect Texas' conventional agricultural industry from innovative competition that is exclusively based outside of Texas...." [according to the lawsuit]. It was filed in September, immediately after the ban took effect, and cell-cultivated companies are awaiting judgment. That Texas ban would last two years, notes U.S. News and World Reports, adding that Alabama, Florida, Indiana, Mississippi, Montana, and Nebraska have also passed bans, some temporary "on the manufacturing, sale or distribution of cell-cultured meat." Meanwhile, a new five-year moratorium on lab-grown meat was signed this week by the governor of South Dakota "after rejecting a permanent ban last month," reports South Dakota Searchlight: The new law bars the sale, manufacture or distribution of "cell-cultured protein" products from July 1 this year through June 30, 2031. Violations are punishable by up to 30 days in jail, a fine of up to $500, or both. "But supporters of lab-grown meat are not going down without a fight," adds U.S. News and World Reports, with another lawsuit also filed challenging a ban in Florida: When Florida Gov. Ron DeSantis signed the ban in Florida, he described it as "fighting back against the global elite's plan to force the world to eat meat grown in a petri dish or bugs to achieve their authoritarian goals." He added that his administration "will save our beef."

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Human Brain Cells On a Chip Learned To Play Doom In a Week

Researchers at Cortical Labs used living human neurons grown on a chip to learn how to play Doom in about a week. "While its performance is not up to par with humans, experts say it brings biological computers a step closer to useful real-world applications, like controlling robot arms," reports New Scientist. From the report: In 2021, the Australian company Cortical Labs used its neuron-powered computer chips to play Pong. The chips consisted of clumps of more than 800,000 living brain cells grown on top of microelectrode arrays that can both send and receive electrical signals. Researchers had to carefully train the chips to control the paddles on either side of the screen. Now, Cortical Labs has developed an interface that makes it easier to program these chips using the popular programming language Python. An independent developer, Sean Cole, then used Python to teach the chips to play Doom, which he did in around a week. "Unlike the Pong work that we did a few years ago, which represented years of painstaking scientific effort, this demonstration has been done in a matter of days by someone who previously had relatively little expertise working directly with biology," says Brett Kagan of Cortical Labs. "It's this accessibility and this flexibility that makes it truly exciting." The neuronal computer chip, which used about a quarter as many neurons as the Pong demonstration, played Doom better than a randomly firing player, but far below the performance of the best human players. However, it learnt much faster than traditional, silicon-based machine learning systems and should be able to improve its performance with newer learning algorithms, says Kagan. However, it's not useful to compare the chips with human brains, he says. "Yes, it's alive, and yes, it's biological, but really what it is being used as is a material that can process information in very special ways that we can't recreate in silicon." Cortical Labs posted a YouTube video showing its CL1 biological computer running Doom. There's also source code available on GitHub, with additional details in a README file.

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